Microbial Keratitis: The Sight-Threatening Corneal Infection
A red, painful eye is one of medicine's great false friends. Most of the time it is conjunctivitis — irritating, self-limiting, harmless. But hiding in that same crowd is an infection of a completely different order: an ulcer eating into the cornea itself, the clear window in front of the eye. Miss it, treat it like pink-eye, and within days the infection can scar the exact patch of cornea the patient sees through — leaving a permanent white cloud on the visual axis. Microbial keratitis is not a nuisance. It is an emergency, and the pharmacology that saves the eye looks nothing like the pharmacology of conjunctivitis.
A 22-year-old university student comes to the eye casualty at 8 a.m., squinting against the light, one eye streaming and scarlet. He wears monthly soft contact lenses and — he admits sheepishly — sleeps in them and tops up the case with tap water. It started yesterday as "a bit of grit"; overnight it became agony, a foreign-body sensation so fierce he could not keep the eye open. At the slit lamp the truth is plain: not the diffuse pink of conjunctivitis but a discrete white spot on the cornea, an infiltrate with a broken surface that stains bright green with fluorescein. In the anterior chamber below it sits a thin crescent of pus — a hypopyon. This is not pink-eye. This is a corneal ulcer, most likely Pseudomonas, and the clock on his central vision has already started.
Why this is an emergency — and not conjunctivitis
Conjunctivitis inflames the surface lining; keratitis destroys the lens you see through. The conjunctiva is a thin, forgiving membrane over the white of the eye; when it gets infected it goes red and weepy and then, almost always, heals without a mark. The cornea is different. It is the eye's clear front lens, avascular and exquisitely ordered so that light passes cleanly to the retina. When bacteria invade the corneal stroma they don't just inflame it — they digest it, releasing enzymes that melt collagen. The body's repair is a scar, and a scar on the cornea is opaque. If that scar lands on the central visual axis, the patient looks out through frosted glass for the rest of their life; if the melt goes deep enough, the cornea can perforate. That is the whole reason keratitis and conjunctivitis, which can look superficially similar to the untrained eye, could not be further apart in urgency. The distinction between them is drawn in detail in the Bacterial conjunctivitis chapter, which carries the map of ocular infections; this chapter is about the one that threatens sight.
Who gets it: the risk factors
A healthy cornea is remarkably resistant; its intact epithelium is a wall that most organisms cannot breach. Keratitis happens when that wall is compromised. By far the dominant risk in the developed world is contact-lens wear — and within that, poor hygiene: sleeping in lenses overnight, topping up old solution, rinsing cases in tap water, swimming or showering in lenses. A lens is a warm, moist, oxygen-starving cap that traps bacteria against the cornea and lets them multiply; overnight wear multiplies the danger several-fold. The other classic doorways are corneal trauma (a scratch, a foreign body, and especially injury with plant or vegetable matter, which points toward fungus), ocular surface disease (dry eye, blepharitis, a poorly closing lid after a facial-nerve palsy — any state that leaves the cornea exposed or poorly lubricated), and — a crucial pharmacological one — topical corticosteroid use, which suppresses local immunity and can turn a smouldering infection into a raging one.
Think of the corneal epithelium as the sealed paintwork on a car and the stroma as the bare metal beneath. As long as the paint is intact, water beads and rolls off and nothing rusts. Scratch the paint — a lens rubbing overnight, a stray branch, a dry patch that cracks — and you expose the metal. Now moisture and salt get in and rust spreads outward from the chip. A corneal ulcer is rust in the eye: it starts at a break in the surface and eats inward, and once it has bitten deep, sanding it back never fully restores the smooth finish. That is why prevention (keeping the paint intact) beats even the best treatment.
The pharmacological approach: scrape first, then hit hard
This is where keratitis parts ways with conjunctivitis at the level of the prescription itself. For simple bacterial conjunctivitis you can reach for a bottle of chloramphenicol and move on. A corneal ulcer demands something the surface infection never does: identify the organism before you drown it. The first step for any significant ulcer is a corneal scrape — the ophthalmologist scrapes material directly from the edge and base of the ulcer for Gram stain, microscopy and culture. This is done first, at presentation, because once intensive antibiotics start they sterilize the plate and you lose your one chance to name the bug and its sensitivities. Then — often immediately after scraping — comes intensive, broad-spectrum topical therapy. The word to hold onto is intensive: this is not four-times-a-day dosing. The antibiotic is dropped onto the eye as often as every hour, day and night, in the first 48 hours. The cornea has no blood supply, so the drug can only reach the infection from the surface; sheer frequency is how you build a lethal concentration in the tissue. The intensity is the treatment.
Bacterial keratitis: fortified drops and fluoroquinolones
The organisms that matter most are Pseudomonas aeruginosa — the aggressive, fast-melting bug of the contact-lens wearer, capable of perforating a cornea in a couple of days — and the Gram-positives Staphylococcus aureus and Streptococcus. Two treatment strategies exist. The first is fortified antibiotics: standard eye drops are made at concentrations tuned for surface infections, so for a deep corneal ulcer the pharmacy compounds them stronger than any commercial bottle — a fortified aminoglycoside (gentamicin or tobramycin) to cover Gram-negatives like Pseudomonas, paired with a fortified cephalosporin (cefuroxime or cefazolin) to cover Gram-positives. These two are given in alternation, each hourly, so the eye receives a drop every thirty minutes. The second strategy is fluoroquinolone monotherapy: a single broad-spectrum agent such as moxifloxacin (or ciprofloxacin, ofloxacin, levofloxacin), which covers both Gram-positive and Gram-negative organisms in one bottle. Monotherapy is simpler, commercially available and well tolerated, and is standard for most community ulcers; fortified duals are reserved for severe, central or unusually aggressive disease. Both of these agents are covered in depth in the Antimicrobials section — the same fluoroquinolones, aminoglycosides and cephalosporins you meet systemically, here delivered at the surface in extraordinary concentration.
Fluoroquinolone monotherapy: moxifloxacin 0.5%, ciprofloxacin 0.3%, ofloxacin, levofloxacin — one bottle, hourly. Fortified duals for severe ulcers: fortified gentamicin or tobramycin (Gram-negatives / Pseudomonas) alternating hourly with fortified cefuroxime or cefazolin (Gram-positives). Acanthamoeba: polyhexamethylene biguanide (PHMB) and/or chlorhexidine, sometimes with a diamidine (propamidine, hexamidine), for months. Fungal: natamycin 5% (the drug of choice for filamentary fungi) and voriconazole. Notice what is absent from every one of these lines in the acute phase: a corticosteroid.
- Keratitis = infection of the cornea itself (an ulcer); NOT conjunctivitis, and never dismiss it as pink-eye.
- Dominant risk is contact-lens wear — especially overnight wear and poor hygiene; also trauma, ocular surface disease, topical steroids.
- Scrape FIRST for microscopy/Gram stain/culture, then start intensive broad-spectrum therapy — never the reverse.
- Bacterial: fortified aminoglycoside + cephalosporin, OR fluoroquinolone monotherapy (moxifloxacin), dosed hourly around the clock.
- Pseudomonas is the aggressive contact-lens organism; it can melt and perforate a cornea within days.
- A hypopyon (pus in the anterior chamber) marks severe disease and a heavy inflammatory load.
Acanthamoeba: pain out of proportion, the ring infiltrate
When a contact-lens wearer has a keratitis that is not settling on antibacterials, and the pain seems wildly out of proportion to the modest signs on the cornea, think Acanthamoeba — a free-living protozoan found in tap water, soil and hot tubs, which is exactly why rinsing lenses or their cases in tap water is so dangerous. Its two signature clues are that ferocious, disproportionate pain (it attacks the corneal nerves) and, later, a ring-shaped infiltrate in the stroma. It is diagnosed by scrape and culture (on special media) or corneal confocal microscopy, and it is genuinely hard to treat: the mainstay is a biguanide — polyhexamethylene biguanide (PHMB) or chlorhexidine — which disrupts the organism's cell membrane, sometimes combined with a diamidine such as propamidine. Treatment is prolonged, measured in many months, because Acanthamoeba encysts into a dormant, drug-resistant form that must be worn down slowly. It is the keratitis that most rewards early suspicion and most punishes delay.
Fungal keratitis: trauma, vegetation, and a different pharmacy
Fungal keratitis classically follows trauma with plant or vegetable matter — a thorn, a branch, a fall onto soil, common in agricultural work and warm climates — and it comes in two flavours. The filamentary moulds, Fusarium and Aspergillus, produce a dry-looking infiltrate with feathery, branching edges and sometimes satellite lesions around the main ulcer. Candida, a yeast, tends to strike an already compromised ocular surface and looks more like a bacterial ulcer. The pharmacology is entirely its own: topical natamycin 5% is the drug of choice for filamentary fungi, and voriconazole (topical, and oral in deep disease) is the other workhorse. Fungal disease is slow, deep and stubborn, and it carries the single most dangerous steroid trap in all of keratitis — which is why the Viral & Fungal chapter treats it, alongside herpes simplex (HSV) keratitis, in full. The link to HSV is worth flagging here: dendritic (branching) herpetic ulcers share the same absolute rule — steroids can be catastrophic while the organism is live.
The cardinal rule: no steroids until the organism is controlled
A steroid quiets the eye and delights the patient — and can hand the infection the eye. A red, angry, infected eye looks like inflammation, and the reflex to reach for a corticosteroid is powerful because a steroid does dramatically reduce redness and pain. But in active microbial keratitis a steroid suppresses the very local immunity that is fighting the organism, and can convert a controllable ulcer into a rampant one — the effect is most catastrophic in fungal, herpes simplex and Acanthamoeba disease, where steroids are notorious for turning a bad eye into a lost one. So the rule is absolute: control the organism first with the appropriate antimicrobial, and only later — cautiously, under specialist supervision, once the infection is proven to be under control — might a steroid be added to limit scarring. This is the practical, sight-saving edge of the whole steroid-in-infection principle taught in the Inflammation chapter. Two more traps belong here. Do not patch an infected eye: a closed, warm, moist pad is an incubator for bacteria and cuts off the oxygen the cornea needs. And never dispense topical anaesthetic for a patient to take home for the pain: it is toxic to the corneal epithelium, blocks healing and, abused, can melt the cornea — the pain of keratitis is controlled with oral analgesia and by treating the infection, not by anaesthetizing the surface.
The mental switch that saves eyes is one line: red-and-painful with a white spot on the cornea and a lens history is not conjunctivitis until proven otherwise. Conjunctivitis has no corneal infiltrate, spares vision and does not scream with pain; keratitis has a stromal infiltrate, a fluorescein-staining defect, real photophobia and threatens the visual axis. The moment you see a corneal opacity in a lens-wearer, the disposition is not "a bottle of drops and see your GP" — it is same-day ophthalmology, a scrape, and hourly antibiotics. Getting that triage right, before any drug is chosen, is what preserves sight.
- Acanthamoeba: suspect in a lens-wearer with pain out of proportion + a late ring infiltrate; treat with biguanides (PHMB/chlorhexidine) ± diamidines for months.
- Fungal: trauma with plant matter → filamentary Fusarium/Aspergillus (feathery, satellites) or Candida; topical natamycin/voriconazole.
- AVOID topical corticosteroids until the organism is controlled — worst in fungal, HSV and Acanthamoeba.
- Do NOT patch an infected eye — it incubates bacteria and starves the cornea of oxygen.
- NEVER give take-home topical anaesthetics — they are toxic to the epithelium and can melt the cornea when abused.
- Contact-lens hygiene is the primary prevention: no overnight wear, no tap water, fresh solution, clean case.
- Treating a corneal ulcer as conjunctivitis — sending a lens-wearer with a white corneal spot home on chloramphenicol instead of same-day scrape and hourly antibiotics.
- Reaching for a topical steroid to quiet a red, painful infected eye — it suppresses local defence and can be catastrophic in fungal, herpetic and Acanthamoeba keratitis.
- Prescribing topical anaesthetic for home pain relief or patching the infected eye — both harm the cornea; anaesthetics are toxic and abused, and a patch incubates the infection.
A soft contact-lens wearer who sleeps in his lenses presents with a painful red eye, a white corneal infiltrate with an overlying epithelial defect, and a small hypopyon. What is the most appropriate immediate management?
- Microbial keratitis is infection of the cornea itself — a sight-threatening emergency because a scar on the visual axis blinds; it is NOT conjunctivitis.
- Dominant risk is contact-lens wear (overnight/poor hygiene), plus trauma, ocular surface disease and topical steroids; scrape FIRST, then hit hard.
- Bacterial (Pseudomonas, Staph/Strep): fortified aminoglycoside + cephalosporin or fluoroquinolone monotherapy (moxifloxacin), hourly; Acanthamoeba needs biguanides for months; fungal needs natamycin/voriconazole.
- Avoid topical steroids until the organism is controlled, don't patch an infected eye, never give take-home anaesthetics — and counsel lens hygiene as prevention.
- Kanski's Clinical Ophthalmology: A Systematic Approach — Cornea: microbial (bacterial, fungal, Acanthamoeba) keratitis.
- Bartlett & Jaanus, Clinical Ocular Pharmacology — Antibacterial, antifungal and antiprotozoal agents; fortified topical antibiotics.
- American Academy of Ophthalmology, Basic and Clinical Science Course (BCSC) — External Disease and Cornea.
- American Academy of Ophthalmology, Preferred Practice Pattern — Bacterial Keratitis.
- Royal College of Ophthalmologists / NICE Clinical Knowledge Summaries — Red eye and microbial keratitis.
- Rang & Dale's Pharmacology — Antibacterial and antifungal drugs (fluoroquinolones, aminoglycosides, cephalosporins, polyenes/azoles).

